Data sets in FLJ human cDNA database

(FLJ human cDNA database ver. 3.1 & 3.2)

Human cDNA sequences used for annotation analysis of Pfam, SOSUI, homology search etc.

1) Human cDNA sequences of cDNAs by oligo-capping method used in this DB

  • Full-length cDNA sequence data

    • a) FLJ full-length cDNA sequence data by FLJ-PJ : 30,326

    b) FLJ full-length cDNA sequence data by human cDNA sequencing project focused on splicing variants of mRNAs in NEDO FAP-PJ

    i) FLJ cDNA full ORF sequencing project I by SV-PJ : 17,697

    (ORF regions and 5'-noncoding regions)

    ii) FLJ cDNA full ORF sequencing project II type A by by FAP-PJ : 3,519

    (ORF regions and 5'-noncoding regions)

    iii) FLJ cDNA full ORF sequencing project II type B by by FAP-PJ : 10

    (including 5'-noncoding region)

    iv) Draft grade sequences of FLJ cDNA full ORF sequencing project I by SV-PJ : 2,622

    2) Others human cDNA sequences from public DB in this DB

  • Full-length sequenced cDNAs

    • a) KIAA (Kazusa DNA Research Institute) : 2,459 (KIAA: 2039, FLJ-PJ : 420)

    b) MGC (Mammalian Gene Collection) : 25,778

    c) DKFZ (Deutsches Krebsforschungszentrum) : 8,212

    d) Other institutions : 15,677

  • RefSeq, human, ver. 2005.10.17

    • a) NM : 24,210

    b) NR : 251

    Human cDNA and genome sequences used for genome mapping

    1) Human cDNA sequences of cDNAs by oligo-capping method used in this DB

  • Full-length cDNA sequence data

    • a) FLJ full-length cDNA sequence data by FLJ-PJ : 30,326

    b) FLJ full-length cDNA sequence data by human cDNA sequencing project focused on splicing variants of mRNAs in NEDO FAP-PJ

    i) FLJ cDNA full ORF sequencing project I by SV-PJ : 17,697

    (ORF regions and 5'-noncoding regions)

    ii) FLJ cDNA full ORF sequencing project II type A by FAP-PJ : 3,519

    (ORF regions and 5'-noncoding regions)

    iii) FLJ cDNA full ORF sequencing project II type B by FAP-PJ : 603

    (including 5'-noncoding region)

    iv) Draft grade sequences of FLJ cDNA full ORF sequencing project I by SV-PJ : 3,282

  • FLJ ESTs : 5'-EST 1,456,213 & 3'-EST 109,283

    • 2) Others human cDNA sequences from public DB in this DB

  • Full-length sequenced cDNAs

    • a) KIAA (Kazusa DNA Research Institute) : 2,459 (KIAA : 2039, FLJ-PJ : 420)

    b) MGC (Mammalian Gene Collection) : 25,778

    c) DKFZ (Deutsches Krebsforschungszentrum) : 8,212

    d) Other institutions : 15,677

  • RefSeq, human, ver. 2005.10.17

    • a) NM : 24,210

    b) NR : 251

    c) XM : 5,239

    d) XR : 61

  • Ensembl, human gene transcripts, human-38.36g/UCSC hg18 : 47,585
  • UniGene, human ESTs* : 5'-EST 2,699,311 & 3'-EST 1,638,884

    • * not including deposited about 1.6 million of FLJ EST sequences

    3) Human genome sequences

  • UCSC hg18 (NCBI Build 36.1)